epiScanpy
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Usage Principles
System Requirements
Installation
API
Count Matrices: CT
Preprocessing: PP
Tools: TL
episcanpy.tl.rank_features
episcanpy.tl.lazy
episcanpy.tl.load_markers
episcanpy.tl.identify_cluster
episcanpy.tl.top_feature_genes
episcanpy.tl.var_features_to_genes
episcanpy.tl.geneactivity
episcanpy.tl.diffmap
episcanpy.tl.draw_graph
episcanpy.tl.tsne
episcanpy.tl.umap
episcanpy.tl.dpt
episcanpy.tl.louvain
episcanpy.tl.leiden
episcanpy.tl.kmeans
episcanpy.tl.hc
episcanpy.tl.getNClusters
episcanpy.tl.dendogram
episcanpy.tl.ARI
episcanpy.tl.AMI
episcanpy.tl.homogeneity
episcanpy.tl.silhouette
Plotting: PL
References
epiScanpy
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episcanpy.tl.kmeans
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episcanpy.tl.kmeans
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