episcanpy.pp.read_ATAC_10x

episcanpy.pp.read_ATAC_10x(matrix, cell_names='', var_names='', path_file='')

Load sparse matrix (including matrices corresponding to 10x data) as AnnData objects. read the mtx file, tsv file coresponding to cell_names and the bed file containing the variable names

Parameters

matrix : sparse count matrix

cell_names : optional, tsv file containing cell names

var_names : optional, bed file containing the feature names

Returns

AnnData object