EpiScanpy – Epigenomics single cell analysis in python¶
EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology, 2018) [Wolf18]. For more information, read scanpy documentation.
Report issues and access the code on GitHub.
Version 0.2.0 August 7, 2020¶
This release deal with the compatibility problems with the latest version of scanpy. Additionally, it contains new features to build quick custom count matrices (bld_mtx_fly), to convert snap into h5ad files (snap2anndata) or build gene activity matrices (geneactivity).
Version 0.1.8 November 5, 2019¶
Release new processing function & quality controls.
Version 0.1.7 November 5, 2019¶
Release for SCOG epiScanpy Hackathon in Saarbrucken.
This version is not fully compatible with previous version.
Version 0.1.0 May 10, 2019¶